I did my own quick survey to see how many applications and tools are using Jena:
MIES,
JemBlog,
Ontolog,
DSpace,
Joseki,
Euler proof mechanism (for just RDF/XML to N3 triple generation),
RDF Grapher,
EOR,
IsaViz,
RDFAuthor,
DAMLJessKB,
IdeaGraph,
Ontology Middleware Module,
Semantic Web Engine,
RDF Topic Maps,
TRIPLE,
FenFire,
DAML+OIL Plugin for Protege-2000,
MDF,
Sesame, and
DELI (used for CC/PP in Cocoon).
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